Research in the Dieckman lab focuses on the mechanisms by which errors in DNA replication and repair and chromatin organization lead to genome instability and disease. Specifically, our main goal is to characterize the interactions of key factors that are essential for the interplay between genomic and epigenetic stability. Two of these factors include the proteins PCNA (the processivity factor that stimulates DNA polymerases during DNA replication and repair) and CAF-1 (the main histone chaperone that is necessary for packaging DNA into nucleosomes following replication and repair). The interaction between PCNA and CAF-1 is crucial for proper DNA synthesis, assembly of nucleosomes, and preservation of epigenetic marks. Students will learn biochemical techniques used in modern biomedical research in order to determine the mechanistic basis of the network of interactions between CAF-1, PCNA, DNA, and other factors during replication-dependent nucleosome assembly and to work towards an understanding of proper DNA maintenance.
Pryor J. M., Eukaryotic Y-Family Polymerases: A Biochemical and Structural Perspective [Book Chapter] 2014
Publications
Journal of molecular biology Orndorff Keely S., Structural Basis for the Interaction Between Yeast Chromatin Assembly Factor 1 and Proliferating Cell Nuclear Antigen, p. 168695 2024
ACS omega Kamayirese Seraphine, Optimizing Phosphopeptide Structures That Target 14-3-3ε in Cutaneous Squamous Cell Carcinoma 2024
Journal of Biological Chemistry Shaw Jeff A., Salmonella enterica serovar Typhimurium has three transketolase enzymes contributing to the pentose phosphate pathway 293:29, p. 11271 - 11282 2018
PloS one Kondratick Christine M., Crystal structures of PCNA mutant proteins defective in gene silencing suggest a novel interaction site on the front face of the PCNA ring 13:3 2018
PloS One Kondratick C. M., Identification of New Mutations at the PCNA Subunit Interface that Block Translesion Synthesis 11:6, p. (12 pages) 2016
Biochemistry Dieckman Lynne M., Distinct structural alterations in proliferating cell nuclear antigen block DNA mismatch repair 52:33, p. 5611 - 5619 2013
DNA Repair Dieckman Lynne M., PCNA trimer instability inhibits translesion synthesis by DNA polymerase η and by DNA polymerase δ 12:5, p. 367 - 376 2013
Subcellular Biochemistry Dieckman Lynne M., PCNA structure and function 62, p. 281 - 299 2012
Biochemistry Dieckman Lynne M., Pre-steady state kinetic studies of the fidelity of nucleotide incorporation by yeast DNA polymerase δ 49:34, p. 7344 - 7350 2010